Liver segmentation 3D-IRCADb-01
The 3D-IRCADb-01 database is composed of the 3D CT-scans of 10 women and 10 men with hepatic tumours in 75% of cases. The 20 folders correspond to 20 different patients, which can be downloaded individually or conjointly. The table below provides information on the image, such as liver size (width, depth, height) or the location of tumours according to Couninaud’s segmentation. It also indicates the major difficulties liver segmentation software may encounter due to the contact with neighbouring organs, an atypical shape or density of the liver, or even artefacts in the image.
These folders are called “3D-IRCADb-1-number” (the number varying between 01 and 20).. These folders are called “3D-IRCADb-01-number” (the number varying between 01 and 20). Each “3D-IRCADb-01-number” folder contains 4 sub-folders called “PATIENT_DICOM”, “LABELLED_DICOM”, “MASKS_DICOM” and “MESHES_VTK”. These folders respectively contain the anonymized patient image in DICOM format, the labelled image corresponding to the various zones of interest segmented in DICOM format, a new set of sub-folders corresponding to the names of the various segmented zones of interest containing the DICOM image of each mask, and finally, all the files corresponding to surface meshes of the various zones of interest in VTK format.
This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
For reference, please cite our publication below. For any further information, please contact us.
Soler, L., A. Hostettler, V. Agnus, A. Charnoz, J. Fasquel, J. Moreau, A. Osswald, M. Bouhadjar, and J. Marescaux. “3D image reconstruction for comparison of algorithm database: A patient specific anatomical and medical image database.” IRCAD, Strasbourg, France, Tech. Rep (2010)
Description of the 20 cases of 3D-IRCADb-01:
| Aperçu | N° | Sex | Year of birth | Voxel size (mm) |
Image size (pixels) |
Liver size (cm) |
Liver Average density |
Liver Pathologies |
Segmentation drawbacks | Download |
|---|---|---|---|---|---|---|---|---|---|---|
 |
1 | F | 1944 | 0,57 0,57 1,6 |
512 512 129 |
18,3 15,1 14.1 |
111 | 7 tumours in III, IV/V, VII, VIII | stomach, pancreas, duodenum | Download (37Mb) |
 |
2 | F | 1987 | 0,78 0,78 1,6 |
512 512 172 |
20,1 16,9 15,7 |
84 | 1 tumour in V | pancreas, duodenum | Download (41Mb) |
 |
3 | M | 1956 | 0,62 0,62 1,25 |
512 512 200 |
16,7 14,9 15,2 |
108 | 1 tumour in IV | Artefac due to metal | Download (61Mb) |
 |
4 | M | 1942 | 0,74 0,74 2 |
512 512 91 |
16,9 12,0 17,2 |
107 | 7 tumours | heart | Download (28Mb) |
 |
5 | M | 1957 | 0,78 0,78 1,6 |
512 512 139 |
19,8 18,6 19,1 |
69 | 0 tumour in Liver | diaphragm, duodenum | Download (42Mb) |
 |
6 | M | 1929 | 0,78 0,78 1,6 |
512 512 135 |
18,8 14,3 20,2 |
105 | 20 tumours in liver | Heart | Download (40Mb) |
 |
7 | M | 1946 | 0,78 0,78 1,6 |
512 512 151 |
24,9 15,2 16,6 |
115 | 0 tumour in Liver (1 adrenal) | spleen | Download (37Mb) |
 |
8 | F | 1970 | 0,56 0,56 1,6 |
512 512 124 |
23,5 17,1 12,5 |
159 | 3 tumours in I, II and IV | Download (34Mb) | |
 |
9 | M | 1949 | 0,87 0,87 2 |
512 512 111 |
20,6 17,0 18,1 |
90 | 1 tumour in V/VIII | stomach, colon | Download (33Mb) |
 |
10 | F | 1953 | 0,73 0,73 1,6 |
512 512 122 |
18,4 15,5 14,8 |
104 | 8 tumours | duodenum, pancreas | Download (34Mb) |
 |
11 | M | 1966 | 0,72 0,72 1,6 |
512 512 132 |
19,1 14,4 16,2 |
108 | 0 tumour in Liver | stomach, pancreas | Download (36Mb) |
 |
12 | F | 1973 | 0,68 0,68 1,0 |
512 512 260 |
19,3 17,7 11,0 |
118 | 1 tumour in VI | Download (65Mb) | |
 |
13 | M | 1951 | 0,67 0,67 1,6 |
512 512 122 |
20,0 12,9 18,1 |
111 | 20 tumours | duodenum, heart | Download (33Mb) |
 |
14 | F | 1970 | 0,72 0,72 1,6 |
512 512 113 |
22,4 15,4 13,4 |
109 | 0 tumour in Liver | spleen, pancreas | Download (30Mb) |
 |
15 | F | 1946 | 0,78 0,78 1,6 |
512 512 125 |
18,8 17,7 14,7 |
104 | 2 tumours in II and VIII | pancreas | Download (30Mb) |
 |
16 | M | 1950 | 0,70 0,70 1,6 |
512 512 155 |
20,2 17,7 20,2 |
40 | 1 tumour in V | muscle | Download (41Mb) |
 |
17 | M | 1942 | 0,74 0,74 1,6 |
512 512 119 |
19,8 17,4 18,9 |
99 | 2 tumours in II and VIII | stomach, heart | Download (31Mb) |
 |
18 | F | 1958 | 0,74 0,74 2,5 |
512 512 74 |
22,5 15,1 18,6 |
49 | 1 tumour in IV/V | oesophagus, muscles | Download (22Mb) |
 |
19 | F | 1970 | 0,70 0,70 4 |
512 512 124 |
19,5 16,5 14,2 |
135 | 46 tumours | stomach, duodenum, pancreas | Download (31Mb) |
 |
20 | F | 1949 | 0,81 0,81 2 |
512 512 225 |
20,0 16,6 16,8 |
59 | 0 tumour in Liver | stomach | Download (63Mb) |
